Identification of SSR and miRNA from transcriptome of tuberose
Downloads
Published
DOI:
https://doi.org/10.5958/0974-0112.2019.00020.3Keywords:
Polianthes tuberosa, microsatellites, simple sequence repeats (SSR), microRNA.Issue
Section
License
Copyright (c) 2019 Indian J. Hortic.
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Abstract
For identification of SSRs, the tuberose transcripts were searched with perl script MISA and a total of 1,656 SSRs in 1,280 transcripts with frequency of one SSR per 9.33 kb of the sequence were identified. In 7876 EST sequence of tuberose, we have identified 87 copies of miRNA. The SSR markers identified in this study can be used for genetic diversity analysis of tuberose and can be used to select tuberose varieties with required traits. The data generated in this study will help in better understanding of the possible role of the transcribed microsatellites and miRNA. Further the data will provide deeper knowledge of genetic mechanisms, evolutionary relationships between tuberose and other plants..
How to Cite
Downloads
Similar Articles
- D.P. Ray, Molecular characterization of six released tomato varieties using Inter Simple Sequence Repeat markers , Indian Journal of Horticulture: Vol. 67 No. 03 (2010): Indian Journal of Horticulture
- Manjusha Verma, Saurabh Rathi, A.D Munshi, Arun Kumar, Lalit Arya, K.V. Bhat, Ravinder Kumar, Genetic diversity of Indian brinjal revealed by RAPD and SSR markers , Indian Journal of Horticulture: Vol. 69 No. 04 (2012): Indian Journal of Horticulture
- S. Lal, A.K. Singh, S.K. Singh, M. Srivastav, N.K. Singh, Genetic diversity in mango cultivars revealed by SSR markers , Indian Journal of Horticulture: Vol. 76 No. 03 (2019): Indian Journal of Horticulture
- G.N. Khadke, K. Hima Bindu, B. Motcha Anthony Reetha, M.A. Suryanarayana, D.H. Sukanya, T. Vasantha Kumar, Inter simple sequence repeat (ISSR) markers as reproducible and specific tools for genetic diversity analysis of betelvine germplasm and Piper species , Indian Journal of Horticulture: Vol. 72 No. 02 (2015): Indian Journal of Horticulture
- Anshuman Singh, A.K. Singh, S.K. Singh, SSR markers reveal genetic diversity in closely related mango hybrids , Indian Journal of Horticulture: Vol. 69 No. 03 (2012): Indian Journal of Horticulture
- Amandeep Kaur, Nirmaljit Kaur, Geeta Bassi, Navraj Kaur, A. S. Dhatt, Morphogical and molecular markers based assessment of genetic diversity in eggplant , Indian Journal of Horticulture: Vol. 77 No. 01 (2020): Indian Journal of Horticulture
- Poonam Kashyap, A.K. Singh, Sanjay K. Singh, Rupesh Deshmukh, Genetic diversity analysis of indigenous and exotic apple genotypes using inter simple sequence repeat markers , Indian Journal of Horticulture: Vol. 67 No. Special Issue (2010): Indian Journal of Horticulture
- Q.R. Huang, S.L. Zheng, S.C. Kim, W.G. Park, R.V. Ramekar, K.C. MahParkeswarappa, Y.C. Park, Y.L. Sun, S.K. Hong, Species discrimination of mountain garlic based on the nrDNA ITS region sequence , Indian Journal of Horticulture: Vol. 77 No. 02 (2020): Indian Journal of Horticulture
- Dimpy Raina, W.S. Dhillon, P.P.S. Gill, Molecular marker-based characterization and genetic diversity of pomegranate genotypes , Indian Journal of Horticulture: Vol. 70 No. 04 (2013): Indian Journal of Horticulture
- A. K. Dubey, Anjana Kholia, Nimisha Sharma, R. M. Sharma, Assessing genetic diversity in Indian pummelo collections utilizing quantitative traits and simple sequence repeat markers (SSRs) , Indian Journal of Horticulture: Vol. 78 No. 01 (2021): Indian Journal of Horticulture
You may also start an advanced similarity search for this article.
Most read articles by the same author(s)
- Shrawan Singh, Pritam Kalia, Manisha Mangal, Hadassah Chinthagunti, Chetna Chug, Sheshnath Mishra, Shivakumara T.N, Uma Rao, In Vitro screening technique and polymorphic DNA markers for introgression of root knot nematode resistance in tropical carrot , Indian Journal of Horticulture: Vol. 76 No. 03 (2019): Indian Journal of Horticulture
