Identification of SSR and miRNA from transcriptome of tuberose
Downloads
Published
DOI:
https://doi.org/10.5958/0974-0112.2019.00020.3Keywords:
Polianthes tuberosa, microsatellites, simple sequence repeats (SSR), microRNA.Issue
Section
License
Copyright (c) 2019 Indian J. Hortic.
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Abstract
For identification of SSRs, the tuberose transcripts were searched with perl script MISA and a total of 1,656 SSRs in 1,280 transcripts with frequency of one SSR per 9.33 kb of the sequence were identified. In 7876 EST sequence of tuberose, we have identified 87 copies of miRNA. The SSR markers identified in this study can be used for genetic diversity analysis of tuberose and can be used to select tuberose varieties with required traits. The data generated in this study will help in better understanding of the possible role of the transcribed microsatellites and miRNA. Further the data will provide deeper knowledge of genetic mechanisms, evolutionary relationships between tuberose and other plants..
How to Cite
Downloads
Similar Articles
- T. C. Mahawar, L. N. Mahawer, S. L. Mundara, R. H. Meena, H. L. Bairwa, Integrated weed management strategies on weed flora, vase life and economic parameters of Prajwal tuberose , Indian Journal of Horticulture: Vol. 77 No. 04 (2020): Indian Journal of Horticulture
- L.N. Mahawer, H.L. Bairwa, Laxman Jat, Response of passive storage duration and polymeric packaging films on postharvest life of Suvasini tuberose cut spikes , Indian Journal of Horticulture: Vol. 76 No. 03 (2019): Indian Journal of Horticulture
- Sandeep Singh, R. R. Rachana, Diversity and population dynamics of thrips species on horticultural crops in Punjab , Indian Journal of Horticulture: Vol. 77 No. 04 (2020): Indian Journal of Horticulture
- MURUGANANTHAM M MALAYALAM, R. Devanathan, Saran Kumar K, Balaaji V S, Yazhini R, Harini G, Hemalatha M, Shashank B, Poornima S, Lakshmi Narayanan R, ShathishBaabu G, Vinothagan S., Parthiban S, Effect of different preservatives on shelf life of cut tuberose (Polianthes tuberosa L.) , Indian Journal of Horticulture: Vol. 82 No. 02 (2025): Indian Journal of Horticulture
- Ravi K. Meena, L.N. Mahawer, H.L. Bairwa, Standardization of NPK dose for growth, floral, bulb and economic parameters on Phule Rajani tuberose , Indian Journal of Horticulture: Vol. 75 No. 03 (2018): Indian Journal of Horticulture
- Vikas Jindal, Geetika Banta, Manjinder Singh, Molecular identification of mango hoppers infesting mango trees in Punjab through DNA barcoding , Indian Journal of Horticulture: Vol. 73 No. 02 (2016): Indian Journal of Horticulture
- M. Sankaran, M.R. Dinesh, D.C. Sunil Gowda, K.V. Ravishankar, Development of interspecific hybrid progenies of mango and their characterization , Indian Journal of Horticulture: Vol. 77 No. 01 (2020): Indian Journal of Horticulture
- B. Vanlalneihi, P. Saha, P. Kalia, Shrawan Singh, Naveen Singh, Microsatellite maker based intervarietal variability study in Indian cauliflower , Indian Journal of Horticulture: Vol. 76 No. 02 (2019): Indian Journal of Horticulture
- Sukhen Chandra Das, Prasenjit Debnath, Abhilasha Krishnamurthy, Pinku Paul, Saurav Saha, Debasree Podder, Ravishankar K. V, Durai P, M.S. Saraswati, Uma Subbaraya, Genetic diversity analysis of banana using SSR markers , Indian Journal of Horticulture: Vol. 81 No. 01 (2024): Indian Journal of Horticulture
- Shilpa Devi, A. D. Munshi, S. S. Dey, T. K. Behera, Chellapilla Bhardwaj, Kishor Gaikwad, Arpan Bhowmik, Arvind Nagar, Generation mean analysis of earliness and fruit yield related traits in Cucumber , Indian Journal of Horticulture: Vol. 80 No. 1 (2023): Indian Journal of Horticulture
You may also start an advanced similarity search for this article.
Most read articles by the same author(s)
- Shrawan Singh, Pritam Kalia, Manisha Mangal, Hadassah Chinthagunti, Chetna Chug, Sheshnath Mishra, Shivakumara T.N, Uma Rao, In Vitro screening technique and polymorphic DNA markers for introgression of root knot nematode resistance in tropical carrot , Indian Journal of Horticulture: Vol. 76 No. 03 (2019): Indian Journal of Horticulture
